J3_8IFE_038

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IFE_038 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.0987

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8IFE|1|2m|A|40
8IFE|1|2m|G|41
*
8IFE|1|2m|C|481
8IFE|1|2m|G|482
8IFE|1|2m|C|483
8IFE|1|2m|A|484
8IFE|1|2m|A|485
8IFE|1|2m|A|486
8IFE|1|2m|U|487
*
8IFE|1|2m|A|512
8IFE|1|2m|G|513
8IFE|1|2m|U|514

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3B

40S ribosomal protein S23

Chain 3I

40S ribosomal protein S9