J3_8INE_005

3D structure

PDB id

8INE (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8INE|1|2|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8INE_005 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0858

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8INE|1|2|C|2393
8INE|1|2|G|2394
8INE|1|2|A|2395
8INE|1|2|A|2396
8INE|1|2|G|2397
8INE|1|2|U|2398
8INE|1|2|G|2399
*
8INE|1|2|C|2805
8INE|1|2|A|2806
8INE|1|2|A|2807
*
8INE|1|2|U|2819
8INE|1|2|C|2820
8INE|1|2|U|2821
8INE|1|2|G|2822

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain F

60S ribosomal protein L34

Chain a

60S ribosomal protein L19