3D structure

PDB id
8INE (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State G'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGAUAGUCAACAAGUAC*GGAAAG*CUCG
Length
27 nucleotides
Bulged bases
8INE|1|2|U|354, 8INE|1|2|A|362, 8INE|1|8|C|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8INE_012 not in the Motif Atlas
Homologous match to J3_8P9A_045
Geometric discrepancy: 0.087
The information below is about J3_8P9A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_07616.1
Basepair signature
cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
Number of instances in this motif group
10

Unit IDs

8INE|1|2|C|351
8INE|1|2|G|352
8INE|1|2|A|353
8INE|1|2|U|354
8INE|1|2|A|355
8INE|1|2|G|356
8INE|1|2|U|357
8INE|1|2|C|358
8INE|1|2|A|359
8INE|1|2|A|360
8INE|1|2|C|361
8INE|1|2|A|362
8INE|1|2|A|363
8INE|1|2|G|364
8INE|1|2|U|365
8INE|1|2|A|366
8INE|1|2|C|367
*
8INE|1|2|G|374
8INE|1|2|G|375
8INE|1|2|A|376
8INE|1|2|A|377
8INE|1|2|A|378
8INE|1|2|G|379
*
8INE|1|8|C|21
8INE|1|8|U|22
8INE|1|8|C|23
8INE|1|8|G|24

Current chains

Chain 2
28S rRNA
Chain 8
5.8S rRNA

Nearby chains

Chain 4
GTP-binding protein 4
Chain D
60S ribosomal protein L4
Chain M
60S ribosomal protein L37
Chain P
60S ribosomal protein L39
Chain h
60S ribosomal protein L26

Coloring options:


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