J3_8INE_016

3D structure

PDB id

8INE (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

8INE|1|2|A|1805, 8INE|1|2|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8INE_016 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.4164

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8INE|1|2|U|1726
8INE|1|2|U|1727
*
8INE|1|2|A|1802
8INE|1|2|G|1803
8INE|1|2|A|1804
8INE|1|2|A|1805
8INE|1|2|G|1806
*
8INE|1|2|C|1832
8INE|1|2|G|1833
8INE|1|2|U|1834
8INE|1|2|G|1835
8INE|1|2|G|1836
8INE|1|2|A|1837

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain c

60S ribosomal protein L21

Chain p

60S ribosomal protein L7