J3_8INF_005

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8INF|1|2|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8INF_005 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0888

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8INF|1|2|C|2393
8INF|1|2|G|2394
8INF|1|2|A|2395
8INF|1|2|A|2396
8INF|1|2|G|2397
8INF|1|2|U|2398
8INF|1|2|G|2399
*
8INF|1|2|C|2805
8INF|1|2|A|2806
8INF|1|2|A|2807
*
8INF|1|2|U|2819
8INF|1|2|C|2820
8INF|1|2|U|2821
8INF|1|2|G|2822

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain F

60S ribosomal protein L34

Chain a

60S ribosomal protein L19