J3_8INF_013
3D structure
- PDB id
- 8INF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State F'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 8INF|1|2|U|354, 8INF|1|2|A|362, 8INF|1|8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8INF_013 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0835
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
8INF|1|2|C|351
8INF|1|2|G|352
8INF|1|2|A|353
8INF|1|2|U|354
8INF|1|2|A|355
8INF|1|2|G|356
8INF|1|2|U|357
8INF|1|2|C|358
8INF|1|2|A|359
8INF|1|2|A|360
8INF|1|2|C|361
8INF|1|2|A|362
8INF|1|2|A|363
8INF|1|2|G|364
8INF|1|2|U|365
8INF|1|2|A|366
8INF|1|2|C|367
*
8INF|1|2|G|374
8INF|1|2|G|375
8INF|1|2|A|376
8INF|1|2|A|377
8INF|1|2|A|378
8INF|1|2|G|379
*
8INF|1|8|C|21
8INF|1|8|U|22
8INF|1|8|C|23
8INF|1|8|G|24
Current chains
- Chain 2
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 4
- GTP-binding protein 4
- Chain D
- 60S ribosomal protein L4
- Chain M
- 60S ribosomal protein L37
- Chain P
- 60S ribosomal protein L39
- Chain h
- 60S ribosomal protein L26
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