J3_8INF_014

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGAAAAG*CG*CA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8INF_014 not in the Motif Atlas

Geometric match to J3_5TBW_002

Geometric discrepancy: 0.1143

The information below is about J3_5TBW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

8INF|1|2|U|380
8INF|1|2|U|381
8INF|1|2|G|382
8INF|1|2|A|383
8INF|1|2|A|384
8INF|1|2|A|385
8INF|1|2|A|386
8INF|1|2|G|387
*
8INF|1|2|C|414
8INF|1|2|G|415
*
8INF|1|8|C|19
8INF|1|8|A|20

Current chains

Chain 2

28S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain 1

Uncharacterized protein C11orf98

Chain 4

GTP-binding protein 4

Chain D

60S ribosomal protein L4

Chain P

60S ribosomal protein L39

Chain h

60S ribosomal protein L26