J3_8INF_018

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

8INF|1|2|A|1805, 8INF|1|2|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8INF_018 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.4108

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_09667.1

Basepair signature

cWW-cWW-F-F-cSS-F-F-cWW

Number of instances in this motif group

2

Unit IDs

8INF|1|2|U|1726
8INF|1|2|U|1727
*
8INF|1|2|A|1802
8INF|1|2|G|1803
8INF|1|2|A|1804
8INF|1|2|A|1805
8INF|1|2|G|1806
*
8INF|1|2|C|1832
8INF|1|2|G|1833
8INF|1|2|U|1834
8INF|1|2|G|1835
8INF|1|2|G|1836
8INF|1|2|A|1837

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain c

60S ribosomal protein L21

Chain p

60S ribosomal protein L7