3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GUUG*CCUUC*GCACCGCACGUUC
Length
22 nucleotides
Bulged bases
8INF|1|2|U|4882, 8INF|1|2|A|4938, 8INF|1|2|C|4940, 8INF|1|2|A|4943, 8INF|1|2|C|4944
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8INF|1|2|G|4751
8INF|1|2|U|4752
8INF|1|2|U|4753
8INF|1|2|G|4754
*
8INF|1|2|C|4879
8INF|1|2|C|4880
8INF|1|2|U|4881
8INF|1|2|U|4882
8INF|1|2|C|4883
*
8INF|1|2|G|4936
8INF|1|2|C|4937
8INF|1|2|A|4938
8INF|1|2|C|4939
8INF|1|2|C|4940
8INF|1|2|G|4941
8INF|1|2|C|4942
8INF|1|2|A|4943
8INF|1|2|C|4944
8INF|1|2|G|4945
8INF|1|2|U|4946
8INF|1|2|U|4947
8INF|1|2|C|4948

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 1
Uncharacterized protein C11orf98
Chain S
60S ribosomal protein L14
Chain V
60S ribosomal protein L13a
Chain n
60S ribosomal protein L35a
Chain o
60S ribosomal protein L6

Coloring options:

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