J3_8INK_020

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8INK_020 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1504

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

8INK|1|2|A|2598
8INK|1|2|G|2599
8INK|1|2|A|2600
8INK|1|2|A|2601
8INK|1|2|G|2602
*
8INK|1|2|C|2737
8INK|1|2|C|2738
*
8INK|1|2|G|2742
8INK|1|2|A|2743
8INK|1|2|A|2744
8INK|1|2|A|2745
8INK|1|2|A|2746
8INK|1|2|U|2747

Current chains

Chain 2

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L34

Chain X

60S ribosomal protein L37a

Chain m

60S ribosomal protein L8