J3_8IP8_010
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8IP8|1|RB|A|2700
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP8_010 not in the Motif Atlas
- Homologous match to J3_8P9A_062
- Geometric discrepancy: 0.0549
- The information below is about J3_8P9A_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8IP8|1|RB|C|2661
8IP8|1|RB|U|2662
8IP8|1|RB|C|2663
*
8IP8|1|RB|G|2687
8IP8|1|RB|A|2688
8IP8|1|RB|A|2689
*
8IP8|1|RB|U|2698
8IP8|1|RB|A|2699
8IP8|1|RB|A|2700
8IP8|1|RB|A|2701
8IP8|1|RB|A|2702
8IP8|1|RB|G|2703
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain BA
- 60S ribosomal protein eL21
- Chain EA
- 60S ribosomal protein uL5
- Chain KA
- 60S ribosomal protein uL18
- Chain TB
- 5S ribosomal RNA; 5S rRNA
- Chain cl
- Transfer RNA; tRNA
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