J3_8IP8_013

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCA*UUAUG*CAAAG

Length

13 nucleotides

Bulged bases

8IP8|1|aa|A|1098

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IP8|1|aa|C|1042
8IP8|1|aa|C|1043
8IP8|1|aa|A|1044
*
8IP8|1|aa|U|1084
8IP8|1|aa|U|1085
8IP8|1|aa|A|1086
8IP8|1|aa|U|1087
8IP8|1|aa|G|1088
*
8IP8|1|aa|C|1095
8IP8|1|aa|A|1096
8IP8|1|aa|A|1097
8IP8|1|aa|A|1098
8IP8|1|aa|G|1099

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain cb

40S ribosomal protein eS21

Chain db

40S ribosomal protein eS26

Chain va

40S ribosomal protein uS8

Chain xa

40S ribosomal protein eS27

Chain za

40S ribosomal protein uS2