J3_8IP8_016

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAUUU*GGGGAAACUUAC*GGCCG

Length

24 nucleotides

Bulged bases

8IP8|1|aa|G|1203, 8IP8|1|aa|G|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IP8|1|aa|U|1185
8IP8|1|aa|U|1186
8IP8|1|aa|A|1187
8IP8|1|aa|A|1188
8IP8|1|aa|U|1189
8IP8|1|aa|U|1190
8IP8|1|aa|U|1191
*
8IP8|1|aa|G|1202
8IP8|1|aa|G|1203
8IP8|1|aa|G|1204
8IP8|1|aa|G|1205
8IP8|1|aa|A|1206
8IP8|1|aa|A|1207
8IP8|1|aa|A|1208
8IP8|1|aa|C|1209
8IP8|1|aa|U|1210
8IP8|1|aa|U|1211
8IP8|1|aa|A|1212
8IP8|1|aa|C|1213
*
8IP8|1|aa|G|1460
8IP8|1|aa|G|1461
8IP8|1|aa|C|1462
8IP8|1|aa|C|1463
8IP8|1|aa|G|1464

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain bl

eukaryotic release factor 1

Chain ma

40S ribosomal protein uS10

Chain oa

40S ribosomal protein uS13

Chain sa

40S ribosomal protein uS19

Chain wa

40S ribosomal protein uS14