J3_8IP8_032
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAGG*CGGCAGAUAGC*GCAUCC
- Length
- 22 nucleotides
- Bulged bases
- 8IP8|1|RB|A|1560, 8IP8|1|RB|A|1562, 8IP8|1|RB|G|1563, 8IP8|1|RB|A|1577, 8IP8|1|RB|U|1578, 8IP8|1|RB|C|1579
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IP8|1|RB|G|1541
8IP8|1|RB|A|1542
8IP8|1|RB|A|1543
8IP8|1|RB|G|1544
8IP8|1|RB|G|1545
*
8IP8|1|RB|C|1554
8IP8|1|RB|G|1555
8IP8|1|RB|G|1556
8IP8|1|RB|C|1557
8IP8|1|RB|A|1558
8IP8|1|RB|G|1559
8IP8|1|RB|A|1560
8IP8|1|RB|U|1561
8IP8|1|RB|A|1562
8IP8|1|RB|G|1563
8IP8|1|RB|C|1564
*
8IP8|1|RB|G|1575
8IP8|1|RB|C|1576
8IP8|1|RB|A|1577
8IP8|1|RB|U|1578
8IP8|1|RB|C|1579
8IP8|1|RB|C|1580
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain AA
- 40S ribosomal protein eL8
- Chain DA
- 60S ribosomal protein uL2
- Chain HA
- 60S ribosomal protein eL15
- Chain NA
- 60S ribosomal protein uL23
- Chain SB
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain UA
- 60S ribosomal protein eL37
Coloring options: