J3_8IP8_046

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCCCG*CCCGUGCCAUUG*CUCGAAGCUCCCUUCCCAAC

Length

38 nucleotides

Bulged bases

8IP8|1|RB|C|3206, 8IP8|1|RB|A|3254, 8IP8|1|RB|C|3256, 8IP8|1|RB|C|3258, 8IP8|1|RB|U|3261, 8IP8|1|RB|U|3262, 8IP8|1|RB|C|3263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IP8|1|RB|G|3162
8IP8|1|RB|C|3163
8IP8|1|RB|C|3164
8IP8|1|RB|C|3165
8IP8|1|RB|C|3166
8IP8|1|RB|G|3167
*
8IP8|1|RB|C|3200
8IP8|1|RB|C|3201
8IP8|1|RB|C|3202
8IP8|1|RB|G|3203
8IP8|1|RB|U|3204
8IP8|1|RB|G|3205
8IP8|1|RB|C|3206
8IP8|1|RB|C|3207
8IP8|1|RB|A|3208
8IP8|1|RB|U|3209
8IP8|1|RB|U|3210
8IP8|1|RB|G|3211
*
8IP8|1|RB|C|3249
8IP8|1|RB|U|3250
8IP8|1|RB|C|3251
8IP8|1|RB|G|3252
8IP8|1|RB|A|3253
8IP8|1|RB|A|3254
8IP8|1|RB|G|3255
8IP8|1|RB|C|3256
8IP8|1|RB|U|3257
8IP8|1|RB|C|3258
8IP8|1|RB|C|3259
8IP8|1|RB|C|3260
8IP8|1|RB|U|3261
8IP8|1|RB|U|3262
8IP8|1|RB|C|3263
8IP8|1|RB|C|3264
8IP8|1|RB|C|3265
8IP8|1|RB|A|3266
8IP8|1|RB|A|3267
8IP8|1|RB|C|3268

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain FB

60S ribosomal protein uL13

Chain LB

60S ribosomal protein eL6

Chain MB

60S ribosomal protein eL33

Chain XA

60S ribosomal protein eL14