J3_8IP9_001
3D structure
- PDB id
- 8IP9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 40S ribosome in complex with a tRNAi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUUC*GAACAACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8IP9|1|aa|C|939
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP9_001 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.0784
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8IP9|1|aa|A|886
8IP9|1|aa|U|887
8IP9|1|aa|U|888
8IP9|1|aa|C|889
*
8IP9|1|aa|G|933
8IP9|1|aa|A|934
8IP9|1|aa|A|935
8IP9|1|aa|C|936
8IP9|1|aa|A|937
8IP9|1|aa|A|938
8IP9|1|aa|C|939
8IP9|1|aa|U|940
8IP9|1|aa|G|941
*
8IP9|1|aa|C|948
8IP9|1|aa|A|949
8IP9|1|aa|U|950
8IP9|1|aa|U|951
8IP9|1|aa|U|952
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain bb
- 40S ribosomal protein eS1
- Chain db
- 40S ribosomal protein eS26
- Chain na
- 40S ribosomal protein uS11
- Chain pa
- 40S ribosomal protein uS15
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