J3_8IPD_004
3D structure
- PDB id
- 8IPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAC*GCUAAGG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IPD_004 not in the Motif Atlas
- Homologous match to J3_5TBW_007
- Geometric discrepancy: 0.2213
- The information below is about J3_5TBW_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28621.3
- Basepair signature
- cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8IPD|1|2|G|1969
8IPD|1|2|A|1970
8IPD|1|2|C|1971
*
8IPD|1|2|G|1995
8IPD|1|2|C|1996
8IPD|1|2|U|1997
8IPD|1|2|A|1998
8IPD|1|2|A|1999
8IPD|1|2|G|2000
8IPD|1|2|G|2001
*
8IPD|1|2|C|2016
8IPD|1|2|A|2017
8IPD|1|2|C|2018
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain J
- Ribosome biogenesis protein NSA2 homolog
- Chain r
- Coiled-coil domain-containing protein 86
- Chain v
- mRNA turnover protein 4 homolog
- Chain y
- 60S ribosomal protein L12
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