J3_8IPD_005

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8IPD|1|2|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IPD_005 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1035

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8IPD|1|2|C|2393
8IPD|1|2|G|2394
8IPD|1|2|A|2395
8IPD|1|2|A|2396
8IPD|1|2|G|2397
8IPD|1|2|U|2398
8IPD|1|2|G|2399
*
8IPD|1|2|C|2805
8IPD|1|2|A|2806
8IPD|1|2|A|2807
*
8IPD|1|2|U|2819
8IPD|1|2|C|2820
8IPD|1|2|U|2821
8IPD|1|2|G|2822

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain F

60S ribosomal protein L34

Chain a

60S ribosomal protein L19