J3_8IPD_006

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAG*C(B9H)AUAUC*GUC

Length

14 nucleotides

Bulged bases

8IPD|1|2|U|2788, 8IPD|1|2|A|2789

QA status

Modified nucleotides: B9H

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IPD_006 not in the Motif Atlas

Homologous match to J3_8P9A_054

Geometric discrepancy: 0.1186

The information below is about J3_8P9A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.1

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8IPD|1|2|G|2402
8IPD|1|2|A|2403
8IPD|1|2|A|2404
8IPD|1|2|G|2405
*
8IPD|1|2|C|2785
8IPD|1|2|B9H|2786
8IPD|1|2|A|2787
8IPD|1|2|U|2788
8IPD|1|2|A|2789
8IPD|1|2|U|2790
8IPD|1|2|C|2791
*
8IPD|1|2|G|2800
8IPD|1|2|U|2801
8IPD|1|2|C|2802

Current chains

Chain 2

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L34

Chain M

60S ribosomal protein L37

Chain P

60S ribosomal protein L39