J3_8IPX_014

3D structure

PDB id

8IPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C'

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8IPX|1|2|G|959, 8IPX|1|2|G|961, 8IPX|1|2|C|962, 8IPX|1|2|G|965, 8IPX|1|2|C|967, 8IPX|1|2|C|968, 8IPX|1|2|C|969, 8IPX|1|2|G|970, 8IPX|1|2|U|971, 8IPX|1|2|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPX|1|2|C|712
8IPX|1|2|C|713
*
8IPX|1|2|G|955
8IPX|1|2|A|956
8IPX|1|2|G|957
8IPX|1|2|G|958
8IPX|1|2|G|959
8IPX|1|2|A|960
8IPX|1|2|G|961
8IPX|1|2|C|962
8IPX|1|2|G|963
8IPX|1|2|A|964
8IPX|1|2|G|965
8IPX|1|2|A|966
8IPX|1|2|C|967
8IPX|1|2|C|968
8IPX|1|2|C|969
8IPX|1|2|G|970
8IPX|1|2|U|971
8IPX|1|2|C|972
8IPX|1|2|G|973
8IPX|1|2|C|974
8IPX|1|2|C|975
8IPX|1|2|G|976
*
8IPX|1|2|C|1278
8IPX|1|2|A|1279
8IPX|1|2|C|1280
8IPX|1|2|G|1281
8IPX|1|2|G|1282
8IPX|1|2|G|1283
8IPX|1|2|G|1284

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain k

60S ribosomal protein L32

Chain o

60S ribosomal protein L6

Chain p

60S ribosomal protein L7