J3_8IPX_019
3D structure
- PDB id
- 8IPX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GGGGGCG*CUCGCUUCUGGCGCCAAG*CGAC
- Length
- 29 nucleotides
- Bulged bases
- 8IPX|1|2|G|4115, 8IPX|1|2|C|4116, 8IPX|1|2|U|4117, 8IPX|1|2|U|4118, 8IPX|1|2|C|4119, 8IPX|1|2|U|4120, 8IPX|1|2|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IPX|1|2|G|4091
8IPX|1|2|G|4092
8IPX|1|2|G|4093
8IPX|1|2|G|4094
8IPX|1|2|G|4095
8IPX|1|2|C|4096
8IPX|1|2|G|4097
*
8IPX|1|2|C|4112
8IPX|1|2|U|4113
8IPX|1|2|C|4114
8IPX|1|2|G|4115
8IPX|1|2|C|4116
8IPX|1|2|U|4117
8IPX|1|2|U|4118
8IPX|1|2|C|4119
8IPX|1|2|U|4120
8IPX|1|2|G|4121
8IPX|1|2|G|4122
8IPX|1|2|C|4123
8IPX|1|2|G|4124
8IPX|1|2|C|4125
8IPX|1|2|C|4126
8IPX|1|2|A|4127
8IPX|1|2|A|4128
8IPX|1|2|G|4129
*
8IPX|1|2|C|4155
8IPX|1|2|G|4156
8IPX|1|2|A|4157
8IPX|1|2|C|4158
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L30
- Chain F
- 60S ribosomal protein L34
- Chain G
- 60S ribosomal protein L7a
- Chain X
- 60S ribosomal protein L37a
- Chain f
- Ribosome biogenesis protein NOP53
- Chain i
- 60S ribosomal protein L27
- Chain m
- 60S ribosomal protein L8
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