J3_8IPY_005

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8IPY|1|2|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IPY_005 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0992

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8IPY|1|2|C|2393
8IPY|1|2|G|2394
8IPY|1|2|A|2395
8IPY|1|2|A|2396
8IPY|1|2|G|2397
8IPY|1|2|U|2398
8IPY|1|2|G|2399
*
8IPY|1|2|C|2805
8IPY|1|2|A|2806
8IPY|1|2|A|2807
*
8IPY|1|2|U|2819
8IPY|1|2|C|2820
8IPY|1|2|U|2821
8IPY|1|2|G|2822

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain F

60S ribosomal protein L34

Chain a

60S ribosomal protein L19