J3_8IPY_011
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 8IPY|1|2|U|354, 8IPY|1|2|A|362, 8IPY|1|8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IPY_011 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0909
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8IPY|1|2|C|351
8IPY|1|2|G|352
8IPY|1|2|A|353
8IPY|1|2|U|354
8IPY|1|2|A|355
8IPY|1|2|G|356
8IPY|1|2|U|357
8IPY|1|2|C|358
8IPY|1|2|A|359
8IPY|1|2|A|360
8IPY|1|2|C|361
8IPY|1|2|A|362
8IPY|1|2|A|363
8IPY|1|2|G|364
8IPY|1|2|U|365
8IPY|1|2|A|366
8IPY|1|2|C|367
*
8IPY|1|2|G|374
8IPY|1|2|G|375
8IPY|1|2|A|376
8IPY|1|2|A|377
8IPY|1|2|A|378
8IPY|1|2|G|379
*
8IPY|1|8|C|21
8IPY|1|8|U|22
8IPY|1|8|C|23
8IPY|1|8|G|24
Current chains
- Chain 2
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 4
- GTP-binding protein 4
- Chain D
- 60S ribosomal protein L4
- Chain M
- 60S ribosomal protein L37
- Chain P
- 60S ribosomal protein L39
- Chain h
- 60S ribosomal protein L26
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