J3_8IR1_004

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IR1_004 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2372

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8IR1|1|2|G|1969
8IR1|1|2|A|1970
8IR1|1|2|C|1971
*
8IR1|1|2|G|1995
8IR1|1|2|C|1996
8IR1|1|2|U|1997
8IR1|1|2|A|1998
8IR1|1|2|A|1999
8IR1|1|2|G|2000
8IR1|1|2|G|2001
*
8IR1|1|2|C|2016
8IR1|1|2|A|2017
8IR1|1|2|C|2018

Current chains

Chain 2

28S rRNA

Nearby chains

Chain J

Ribosome biogenesis protein NSA2 homolog

Chain v

mRNA turnover protein 4 homolog

Chain y

60S ribosomal protein L12