J3_8IR1_016

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

8IR1|1|2|A|1805, 8IR1|1|2|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IR1_016 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.556

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8IR1|1|2|U|1726
8IR1|1|2|U|1727
*
8IR1|1|2|A|1802
8IR1|1|2|G|1803
8IR1|1|2|A|1804
8IR1|1|2|A|1805
8IR1|1|2|G|1806
*
8IR1|1|2|C|1832
8IR1|1|2|G|1833
8IR1|1|2|U|1834
8IR1|1|2|G|1835
8IR1|1|2|G|1836
8IR1|1|2|A|1837

Current chains

Chain 2

28S rRNA

Nearby chains

Chain c

60S ribosomal protein L21

Chain p

60S ribosomal protein L7