J3_8IR1_019

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8IR1|1|2|U|4882, 8IR1|1|2|A|4938, 8IR1|1|2|C|4940, 8IR1|1|2|A|4943, 8IR1|1|2|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR1|1|2|G|4751
8IR1|1|2|U|4752
8IR1|1|2|U|4753
8IR1|1|2|G|4754
*
8IR1|1|2|C|4879
8IR1|1|2|C|4880
8IR1|1|2|U|4881
8IR1|1|2|U|4882
8IR1|1|2|C|4883
*
8IR1|1|2|G|4936
8IR1|1|2|C|4937
8IR1|1|2|A|4938
8IR1|1|2|C|4939
8IR1|1|2|C|4940
8IR1|1|2|G|4941
8IR1|1|2|C|4942
8IR1|1|2|A|4943
8IR1|1|2|C|4944
8IR1|1|2|G|4945
8IR1|1|2|U|4946
8IR1|1|2|U|4947
8IR1|1|2|C|4948

Current chains

Chain 2

28S rRNA

Nearby chains

Chain S

60S ribosomal protein L14

Chain V

60S ribosomal protein L13a

Chain n

60S ribosomal protein L35a

Chain o

60S ribosomal protein L6