J3_8IR1_023

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IR1_023 not in the Motif Atlas

Geometric match to J3_8P9A_087

Geometric discrepancy: 0.2685

The information below is about J3_8P9A_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05348.1

Basepair signature

cWW-cWW-cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

8IR1|1|2|U|2575
8IR1|1|2|G|2576
*
8IR1|1|2|C|2585
8IR1|1|2|G|2586
8IR1|1|2|A|2587
8IR1|1|2|C|2588
8IR1|1|2|C|2589
*
8IR1|1|2|G|2756
8IR1|1|2|A|2757

Current chains

Chain 2

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L34

Chain i

60S ribosomal protein L27