J3_8IR3_001

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

8IR3|1|2|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR3|1|2|C|112
8IR3|1|2|A|113
8IR3|1|2|G|114
8IR3|1|2|C|115
8IR3|1|2|G|116
*
8IR3|1|2|C|155
8IR3|1|2|G|156
8IR3|1|2|U|157
8IR3|1|2|A|158
8IR3|1|2|C|159
8IR3|1|2|G|160
*
8IR3|1|2|C|275
8IR3|1|2|C|276
8IR3|1|2|G|277
8IR3|1|2|G|278

Current chains

Chain 2

28S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain H

60S ribosomal protein L35

Chain K

60S ribosomal protein L36

Chain Q

60S ribosomal protein L13

Chain U

60S ribosomal protein L15