J3_8IR3_022
3D structure
- PDB id
- 8IR3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State B'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGAAG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IR3_022 not in the Motif Atlas
- Homologous match to J3_8P9A_058
- Geometric discrepancy: 0.1654
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08594.1
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8IR3|1|2|A|2598
8IR3|1|2|G|2599
8IR3|1|2|A|2600
8IR3|1|2|A|2601
8IR3|1|2|G|2602
*
8IR3|1|2|C|2737
8IR3|1|2|C|2738
*
8IR3|1|2|G|2742
8IR3|1|2|A|2743
8IR3|1|2|A|2744
8IR3|1|2|A|2745
8IR3|1|2|A|2746
8IR3|1|2|U|2747
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L34
- Chain X
- 60S ribosomal protein L37a
- Chain m
- 60S ribosomal protein L8
- Chain q
- Pescadillo homolog
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