J3_8IR3_023

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACGG*CUGAC*GGACAGU

Length

16 nucleotides

Bulged bases

8IR3|1|2|G|4076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IR3_023 not in the Motif Atlas

Geometric match to J3_4V9F_007

Geometric discrepancy: 0.2032

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86017.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8IR3|1|2|A|3936
8IR3|1|2|C|3937
8IR3|1|2|G|3938
8IR3|1|2|G|3939
*
8IR3|1|2|C|4074
8IR3|1|2|U|4075
8IR3|1|2|G|4076
8IR3|1|2|A|4077
8IR3|1|2|C|4078
*
8IR3|1|2|G|4168
8IR3|1|2|G|4169
8IR3|1|2|A|4170
8IR3|1|2|C|4171
8IR3|1|2|A|4172
8IR3|1|2|G|4173
8IR3|1|2|U|4174

Current chains

Chain 2

28S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain U

60S ribosomal protein L15

Chain m

60S ribosomal protein L8