J3_8J1Z_009

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8J1Z_009 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0681

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

8J1Z|1|a|G|30
8J1Z|1|a|C|31
*
8J1Z|1|a|G|474
8J1Z|1|a|C|475
8J1Z|1|a|G|476
8J1Z|1|a|A|477
8J1Z|1|a|A|478
8J1Z|1|a|A|479
8J1Z|1|a|A|480
8J1Z|1|a|G|481
*
8J1Z|1|a|C|509
8J1Z|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain t

50S ribosomal protein L24