J3_8JDJ_001

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

8JDJ|1|D|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDJ|1|D|C|112
8JDJ|1|D|A|113
8JDJ|1|D|G|114
8JDJ|1|D|C|115
8JDJ|1|D|G|116
*
8JDJ|1|D|C|155
8JDJ|1|D|G|156
8JDJ|1|D|U|157
8JDJ|1|D|A|158
8JDJ|1|D|C|159
8JDJ|1|D|G|160
*
8JDJ|1|D|C|275
8JDJ|1|D|C|276
8JDJ|1|D|G|277
8JDJ|1|D|G|278

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L7a

Chain Q

60S ribosomal protein L13

Chain S

60S ribosomal protein L15

Chain m

60S ribosomal protein L35

Chain n

60S ribosomal protein L36