J3_8JDJ_006

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDJ|1|D|A|2551
8JDJ|1|D|G|2552
8JDJ|1|D|A|2553
8JDJ|1|D|U|2554
8JDJ|1|D|G|2555
*
8JDJ|1|D|C|2572
8JDJ|1|D|A|2573
8JDJ|1|D|G|2574
8JDJ|1|D|U|2575
*
8JDJ|1|D|A|2757
8JDJ|1|D|G|2758
8JDJ|1|D|G|2759
8JDJ|1|D|G|2760
8JDJ|1|D|U|2761
8JDJ|1|D|G|2762
8JDJ|1|D|U|2763
8JDJ|1|D|A|2764
8JDJ|1|D|A|2765
8JDJ|1|D|A|2766
8JDJ|1|D|U|2767

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain e

60S ribosomal protein L27