J3_8JDJ_007

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8JDJ_007 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.133

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8JDJ|1|D|C|3937
8JDJ|1|D|G|3938
8JDJ|1|D|G|3939
*
8JDJ|1|D|C|4074
8JDJ|1|D|U|4075
8JDJ|1|D|G|4076
8JDJ|1|D|A|4077
8JDJ|1|D|C|4078
*
8JDJ|1|D|G|4168
8JDJ|1|D|G|4169
8JDJ|1|D|A|4170
8JDJ|1|D|C|4171
8JDJ|1|D|A|4172
8JDJ|1|D|G|4173

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L8

Chain M

60S ribosomal protein L7a

Chain S

60S ribosomal protein L15