J3_8JDJ_034
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- (OMG)UC*GCCUCACGAUCC*(OMG)GUGUC
- Length
- 21 nucleotides
- Bulged bases
- 8JDJ|1|D|C|4337, 8JDJ|1|D|U|4374
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8JDJ_034 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0772
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8JDJ|1|D|OMG|4228
8JDJ|1|D|U|4229
8JDJ|1|D|C|4230
*
8JDJ|1|D|G|4331
8JDJ|1|D|C|4332
8JDJ|1|D|C|4333
8JDJ|1|D|U|4334
8JDJ|1|D|C|4335
8JDJ|1|D|A|4336
8JDJ|1|D|C|4337
8JDJ|1|D|G|4338
8JDJ|1|D|A|4339
8JDJ|1|D|U|4340
8JDJ|1|D|C|4341
8JDJ|1|D|C|4342
*
8JDJ|1|D|OMG|4370
8JDJ|1|D|G|4371
8JDJ|1|D|U|4372
8JDJ|1|D|G|4373
8JDJ|1|D|U|4374
8JDJ|1|D|C|4375
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain V
- 60S ribosomal protein L18
- Chain Y
- 60S ribosomal protein L21
- Chain f
- 60S ribosomal protein L27a
- Chain t
- 60S ribosomal protein L36a
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