J3_8JDJ_039

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AG*CGC(A2M)AAU*(A2M)GU

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8JDJ_039 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.1152

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8JDJ|1|w|A|40
8JDJ|1|w|G|41
*
8JDJ|1|w|C|481
8JDJ|1|w|G|482
8JDJ|1|w|C|483
8JDJ|1|w|A2M|484
8JDJ|1|w|A|485
8JDJ|1|w|A|486
8JDJ|1|w|U|487
*
8JDJ|1|w|A2M|512
8JDJ|1|w|G|513
8JDJ|1|w|U|514

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S9

Chain AJ

40S ribosomal protein S23