J3_8JDJ_046

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8JDJ_046 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.0863

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8JDJ|1|w|U|1350
8JDJ|1|w|G|1351
*
8JDJ|1|w|U|1360
8JDJ|1|w|G|1361
8JDJ|1|w|U|1362
8JDJ|1|w|C|1363
*
8JDJ|1|w|G|1375
8JDJ|1|w|A|1376
8JDJ|1|w|U|1377
8JDJ|1|w|A|1378
8JDJ|1|w|A|1379

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AD

40S ribosomal protein S17

Chain x

40S ribosomal protein SA

Chain z

40S ribosomal protein S2