J3_8JDK_001

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

8JDK|1|D|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|D|C|112
8JDK|1|D|A|113
8JDK|1|D|G|114
8JDK|1|D|C|115
8JDK|1|D|G|116
*
8JDK|1|D|C|155
8JDK|1|D|G|156
8JDK|1|D|U|157
8JDK|1|D|A|158
8JDK|1|D|C|159
8JDK|1|D|G|160
*
8JDK|1|D|C|275
8JDK|1|D|C|276
8JDK|1|D|G|277
8JDK|1|D|G|278

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L7a

Chain Q

60S ribosomal protein L13

Chain S

60S ribosomal protein L15

Chain m

60S ribosomal protein L35

Chain n

60S ribosomal protein L36