J3_8JDK_004

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8JDK|1|D|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8JDK_004 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.078

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8JDK|1|D|C|2393
8JDK|1|D|G|2394
8JDK|1|D|A|2395
8JDK|1|D|A|2396
8JDK|1|D|G|2397
8JDK|1|D|U|2398
8JDK|1|D|G|2399
*
8JDK|1|D|C|2805
8JDK|1|D|A|2806
8JDK|1|D|A|2807
*
8JDK|1|D|U|2819
8JDK|1|D|C|2820
8JDK|1|D|U|2821
8JDK|1|D|G|2822

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L19

Chain l

60S ribosomal protein L34