J3_8JDK_006

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|D|A|2551
8JDK|1|D|G|2552
8JDK|1|D|A|2553
8JDK|1|D|U|2554
8JDK|1|D|G|2555
*
8JDK|1|D|C|2572
8JDK|1|D|A|2573
8JDK|1|D|G|2574
8JDK|1|D|U|2575
*
8JDK|1|D|A|2757
8JDK|1|D|G|2758
8JDK|1|D|G|2759
8JDK|1|D|G|2760
8JDK|1|D|U|2761
8JDK|1|D|G|2762
8JDK|1|D|U|2763
8JDK|1|D|A|2764
8JDK|1|D|A|2765
8JDK|1|D|A|2766
8JDK|1|D|U|2767

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain e

60S ribosomal protein L27