J3_8JDK_024
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- UUGAAAAG*CG*CA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8JDK_024 not in the Motif Atlas
- Geometric match to J3_5TBW_002
- Geometric discrepancy: 0.0778
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
8JDK|1|D|U|380
8JDK|1|D|U|381
8JDK|1|D|G|382
8JDK|1|D|A|383
8JDK|1|D|A|384
8JDK|1|D|A|385
8JDK|1|D|A|386
8JDK|1|D|G|387
*
8JDK|1|D|C|414
8JDK|1|D|G|415
*
8JDK|1|F|C|19
8JDK|1|F|A|20
Current chains
- Chain D
- 28S ribosomal RNA
- Chain F
- 5.8S ribosomal RNA
Nearby chains
- Chain I
- 60S ribosomal protein L4
- Chain d
- 60S ribosomal protein L26
- Chain q
- 60S ribosomal protein L39
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