J3_8JDK_028
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- UU*AGAAG*CGUGGA
- Length
- 13 nucleotides
- Bulged bases
- 8JDK|1|D|A|1805, 8JDK|1|D|U|1834
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8JDK_028 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.4088
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.1
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8JDK|1|D|U|1726
8JDK|1|D|U|1727
*
8JDK|1|D|A|1802
8JDK|1|D|G|1803
8JDK|1|D|A|1804
8JDK|1|D|A|1805
8JDK|1|D|G|1806
*
8JDK|1|D|C|1832
8JDK|1|D|G|1833
8JDK|1|D|U|1834
8JDK|1|D|G|1835
8JDK|1|D|G|1836
8JDK|1|D|A|1837
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L7
- Chain Y
- 60S ribosomal protein L21
- Chain g
- 60S ribosomal protein L29
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