J3_8JDK_032
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- AGAAG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8JDK_032 not in the Motif Atlas
- Homologous match to J3_8P9A_058
- Geometric discrepancy: 0.1565
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08594.1
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8JDK|1|D|A|2598
8JDK|1|D|G|2599
8JDK|1|D|A|2600
8JDK|1|D|A|2601
8JDK|1|D|G|2602
*
8JDK|1|D|C|2737
8JDK|1|D|C|2738
*
8JDK|1|D|G|2742
8JDK|1|D|A|2743
8JDK|1|D|A|2744
8JDK|1|D|A|2745
8JDK|1|D|A|2746
8JDK|1|D|U|2747
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain G
- 60S ribosomal protein L8
- Chain l
- 60S ribosomal protein L34
- Chain u
- 60S ribosomal protein L37a
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