J3_8JDK_034

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8JDK|1|D|U|4882, 8JDK|1|D|A|4938, 8JDK|1|D|C|4940, 8JDK|1|D|A|4943, 8JDK|1|D|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|D|G|4751
8JDK|1|D|U|4752
8JDK|1|D|U|4753
8JDK|1|D|G|4754
*
8JDK|1|D|C|4879
8JDK|1|D|C|4880
8JDK|1|D|U|4881
8JDK|1|D|U|4882
8JDK|1|D|C|4883
*
8JDK|1|D|G|4936
8JDK|1|D|C|4937
8JDK|1|D|A|4938
8JDK|1|D|C|4939
8JDK|1|D|C|4940
8JDK|1|D|G|4941
8JDK|1|D|C|4942
8JDK|1|D|A|4943
8JDK|1|D|C|4944
8JDK|1|D|G|4945
8JDK|1|D|U|4946
8JDK|1|D|U|4947
8JDK|1|D|C|4948

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L6

Chain R

60S ribosomal protein L14

Chain T

60S ribosomal protein L13a

Chain k

60S ribosomal protein L35a