J3_8JDL_001

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

8JDL|1|D|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDL|1|D|C|112
8JDL|1|D|A|113
8JDL|1|D|G|114
8JDL|1|D|C|115
8JDL|1|D|G|116
*
8JDL|1|D|C|155
8JDL|1|D|G|156
8JDL|1|D|U|157
8JDL|1|D|A|158
8JDL|1|D|C|159
8JDL|1|D|G|160
*
8JDL|1|D|C|275
8JDL|1|D|C|276
8JDL|1|D|G|277
8JDL|1|D|G|278

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L7a

Chain Q

60S ribosomal protein L13

Chain S

60S ribosomal protein L15

Chain m

60S ribosomal protein L35

Chain n

60S ribosomal protein L36