J3_8JDL_034

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8JDL|1|D|U|4882, 8JDL|1|D|A|4938, 8JDL|1|D|C|4940, 8JDL|1|D|A|4943, 8JDL|1|D|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDL|1|D|G|4751
8JDL|1|D|U|4752
8JDL|1|D|U|4753
8JDL|1|D|G|4754
*
8JDL|1|D|C|4879
8JDL|1|D|C|4880
8JDL|1|D|U|4881
8JDL|1|D|U|4882
8JDL|1|D|C|4883
*
8JDL|1|D|G|4936
8JDL|1|D|C|4937
8JDL|1|D|A|4938
8JDL|1|D|C|4939
8JDL|1|D|C|4940
8JDL|1|D|G|4941
8JDL|1|D|C|4942
8JDL|1|D|A|4943
8JDL|1|D|C|4944
8JDL|1|D|G|4945
8JDL|1|D|U|4946
8JDL|1|D|U|4947
8JDL|1|D|C|4948

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L6

Chain R

60S ribosomal protein L14

Chain T

60S ribosomal protein L13a

Chain k

60S ribosomal protein L35a