J3_8JDL_039
3D structure
- PDB id
- 8JDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- AGAUUAAG*CGCGC(A2M)AAU*(A2M)GU
- Length
- 20 nucleotides
- Bulged bases
- 8JDL|1|w|A|46
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8JDL_039 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0775
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8JDL|1|w|A|40
8JDL|1|w|G|41
8JDL|1|w|A|42
8JDL|1|w|U|43
8JDL|1|w|U|44
8JDL|1|w|A|45
8JDL|1|w|A|46
8JDL|1|w|G|47
*
8JDL|1|w|C|479
8JDL|1|w|G|480
8JDL|1|w|C|481
8JDL|1|w|G|482
8JDL|1|w|C|483
8JDL|1|w|A2M|484
8JDL|1|w|A|485
8JDL|1|w|A|486
8JDL|1|w|U|487
*
8JDL|1|w|A2M|512
8JDL|1|w|G|513
8JDL|1|w|U|514
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 6
- 40S ribosomal protein S9
- Chain AJ
- 40S ribosomal protein S23
Coloring options: