J3_8JDM_006

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDM|1|D|A|2551
8JDM|1|D|G|2552
8JDM|1|D|A|2553
8JDM|1|D|U|2554
8JDM|1|D|G|2555
*
8JDM|1|D|C|2572
8JDM|1|D|A|2573
8JDM|1|D|G|2574
8JDM|1|D|U|2575
*
8JDM|1|D|A|2757
8JDM|1|D|G|2758
8JDM|1|D|G|2759
8JDM|1|D|G|2760
8JDM|1|D|U|2761
8JDM|1|D|G|2762
8JDM|1|D|U|2763
8JDM|1|D|A|2764
8JDM|1|D|A|2765
8JDM|1|D|A|2766
8JDM|1|D|U|2767

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain e

60S ribosomal protein L27