J3_8JDM_007

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8JDM_007 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.1342

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8JDM|1|D|C|3937
8JDM|1|D|G|3938
8JDM|1|D|G|3939
*
8JDM|1|D|C|4074
8JDM|1|D|U|4075
8JDM|1|D|G|4076
8JDM|1|D|A|4077
8JDM|1|D|C|4078
*
8JDM|1|D|G|4168
8JDM|1|D|G|4169
8JDM|1|D|A|4170
8JDM|1|D|C|4171
8JDM|1|D|A|4172
8JDM|1|D|G|4173

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L8

Chain M

60S ribosomal protein L7a

Chain S

60S ribosomal protein L15