J3_8JDM_025
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 8JDM|1|D|G|409, 8JDM|1|D|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8JDM_025 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.3101
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8JDM|1|D|U|380
8JDM|1|D|U|381
8JDM|1|D|G|382
8JDM|1|D|A|383
8JDM|1|D|A|384
8JDM|1|D|A|385
8JDM|1|D|A|386
8JDM|1|D|G|387
8JDM|1|D|A|388
8JDM|1|D|A|389
8JDM|1|D|C|390
*
8JDM|1|D|G|401
8JDM|1|D|A|402
8JDM|1|D|G|403
8JDM|1|D|U|404
8JDM|1|D|U|405
8JDM|1|D|C|406
8JDM|1|D|A|407
8JDM|1|D|A|408
8JDM|1|D|G|409
8JDM|1|D|A|410
8JDM|1|D|G|411
8JDM|1|D|G|412
8JDM|1|D|G|413
8JDM|1|D|C|414
8JDM|1|D|G|415
*
8JDM|1|F|C|19
8JDM|1|F|A|20
Current chains
- Chain D
- 28S ribosomal RNA
- Chain F
- 5.8S ribosomal RNA
Nearby chains
- Chain I
- 60S ribosomal protein L4
- Chain U
- 60S ribosomal protein L17
- Chain d
- 60S ribosomal protein L26
- Chain q
- 60S ribosomal protein L39
Coloring options: